Overview
This collection of 12 tools handles data conversion between different formats, file processing, and variant filtering operations essential for genomic analysis workflows.File Preview & Inspection
- first_k_lines_of_csv — Preview the first K lines of a CSV file
Format Conversion Tools
- csv_to_vcf — Convert CSV data to VCF format
- convert_xlsx_to_csv — Transform Excel spreadsheets to CSV
- convert_tsv_to_csv — Convert tab-separated values to comma-separated values
- genomic_to_vcf — Convert genomic data formats to VCF
Data Creation & Generation
- create_csv_from_data — Generate CSV files from structured data
VCF Operations
- check_vcf_compatibility — Validate VCF file compatibility
- index_vcf — Create index files for VCF datasets
- convert_ids_in_csv_using_vcf — Map and convert identifiers using VCF
Variant Filtering
- filter_vcf_by_rsids — Filter variants by specific RSIDs
- filter_vcf_by_genes — Extract variants from specific genes